References are stored and formatted with either EndNote or RefMan, where EndNote is more common. Papers are written in Word, posters are made in PowerPoint, Office 2003 is our go to application. Posted by metex at 12:09 AM on March 24, 2008ĭo professional biologists use MS Office? What you want to do is just do a \scalebox this keeps it where you want at the cost of you not being able to internally reference it. If your issue is making figures stick to where you want them(most peoples) dont follow the proper figure definition(it allows the figure to float). Tables are easy however figures are the bane of peoples lives in latex. You really should have a template by now that has almost all the formating done for you however you really do need to pick up a book on Latex period. ![]() I don't know of a single journal in my field that excepts anything but latex. Mathematica will give you some of the best 2D plots you will ever see, MatLab for 3D plots (Not free). You use a combination of Excel and OpenOffice(REALLY good for the conversions into diffrent formats) to get it into the format you want so you can data process it.Īnalysis? Mathematica(not free), MatLab(not free), fityk (free) for peak analysis not my favorite thing but people swear by it, Excel/OpenOffice for quick linear fits.Ģ. Usually what happens is your measuring device outputs in some weird format such as first 2 fields separated by & the rest by tabs except for the last field is separated by a | and it uses commas as decimal places. I'm a grad student physicists who's unfortunate duties are selecting and compiling software that is put on all the laptops that are given to undergrad students.ĭata storage? you will be amazed at how you will come to love flat files that separate each field by a comma since almost all programs accept them. posted by fleeba to Computers & Internet (28 answers total) 8 users marked this as a favorite Sorry for the vague question - I have no idea what I'm researching yet. Requirements: Leopard-compatible, good documentation, and free. I like LaTeX for citations (BibDesk!) and because I can use version control (mercurial), but inserting figures and data tables confuses the hell out of me. Is LaTeX the de-facto standard in reports? I've been using LaTeX for a year, but it seems like I spend more time formatting the document than writing it. I've used Excel forever, but does the professional science world use it?ģ. I've used Word and Excel for most of my labs, and occasionally LaTeX, but do professional biologists use MS Office? With that in mind, I'm looking for software recommendations for the following:ġ. will be slightly different.As summer nears, I'm starting to get organized for my senior research project (bio and chem theses). If you're using 2.x, the open and writer =. Writer = csv.writer(tsvfile, delimiter='\t', lineterminator='\n')įor record in SeqIO.parse("/home/fil/Desktop/420_2_03_074.fastq", "fastq"): With open('records.tsv', 'w', newline='') as tsvfile: ![]() The following code snippet should do the trick for you: #! /bin/env python3 It will be easier to support when the next person has to go in to update the code 5 years after you've left the company.You're not going to have to reinvent the wheel, either when you write the file or when you read it back in on the other end (I don't know your record format, but if one of your records contains a TAB, CSV will escape it correctly for you).You can be fairly confident it will function as expected (not always the case when I write it myself).It allows you to leverage all the functionality of the CSV module.Somebody else has already done all the heavy lifting.My preferred solution is to use the CSV module.
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